In nature, various different microorganisms form highly complex communities in which every species has a distinct role. One example are symbiotic associations of a phototrophic cyanobacteria or algae and a heterotrophic fungi – so called lichens. Our goal is the de novo design of a synthetic cross-kingdom community inspired by a lichen.
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CYANO SEMINAR
The major topics currently under investigation in our laboratory are
Research Tools
We use the following tools for our laboratory work:
- Modern molecular cloning methods (BioBrick assembly, Gibson & Aqua Cloning)
- Report-gene activity measurements
- RNA analysis (purification, hybridization, qPCR, in-line probing)
- RNA interaction with RNA, proteins, ligands
- Recombinant protein expression in E. coli and cyanobacteria
- Protein purification and characterization (interaction studies, activity assays)
- Metabolic engineering of cyanobacteria
- Phenotypic analysis of cyanobacterial mutants
We use the following tools for our computational work:
- In silico cloning with SnapGene
- Data analyses with Python 3 and Jupyter Notebook/Lab
- Data analyses with R and RStudio
- Comparative genomic analysis
- Flux Balance Analysis with COBRApy